From 0b735884dbd1150fc8c21a144ed7d160de9712cc Mon Sep 17 00:00:00 2001 From: Mark DePristo Date: Thu, 23 Aug 2012 08:55:27 -0400 Subject: [PATCH] Cleanup code in VariantContext --- .../sting/utils/variantcontext/VariantContext.java | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/public/java/src/org/broadinstitute/sting/utils/variantcontext/VariantContext.java b/public/java/src/org/broadinstitute/sting/utils/variantcontext/VariantContext.java index 8015889f5..8da6d452e 100755 --- a/public/java/src/org/broadinstitute/sting/utils/variantcontext/VariantContext.java +++ b/public/java/src/org/broadinstitute/sting/utils/variantcontext/VariantContext.java @@ -1,6 +1,5 @@ package org.broadinstitute.sting.utils.variantcontext; -import org.apache.commons.math.stat.descriptive.rank.Max; import org.apache.log4j.Logger; import org.broad.tribble.Feature; import org.broad.tribble.TribbleException; @@ -179,7 +178,7 @@ import java.util.*; */ public class VariantContext implements Feature { // to enable tribble integration private final static boolean WARN_ABOUT_BAD_END = true; - private final static long MAX_ALLELE_SIZE_FOR_NON_SV = 150; + private final static int MAX_ALLELE_SIZE_FOR_NON_SV = 150; final protected static Logger logger = Logger.getLogger(VariantContext.class); private boolean fullyDecoded = false; protected CommonInfo commonInfo = null;