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Now includes project consensus high sensitivity data set 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5394 348d0f76-0448-11de-a6fe-93d51630548a
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depristo 2011-03-07 20:52:11 +00:00
parent 43056d0188
commit 0b4e51317b
1 changed files with 1 additions and 1 deletions
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2
java/src/org/broadinstitute/sting/gatk/walkers/varianteval/evaluators/ValidationReport.java
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@ -28,7 +28,6 @@ import java.util.*;
@Analysis(description = "Assess site accuracy and sensitivity of callset against follow-up validation assay") @Analysis(description = "Assess site accuracy and sensitivity of callset against follow-up validation assay")
public class ValidationReport extends VariantEvaluator implements StandardEval { public class ValidationReport extends VariantEvaluator implements StandardEval {
// todo -- note this isn't strictly allele away. It's really focused on sites. A/T call at a validated A/G site is currently counted as a TP // todo -- note this isn't strictly allele away. It's really focused on sites. A/T call at a validated A/G site is currently counted as a TP
@DataPoint(description = "nComp") int nComp = 0; @DataPoint(description = "nComp") int nComp = 0;
@DataPoint(description = "TP") int TP = 0; @DataPoint(description = "TP") int TP = 0;
@DataPoint(description = "FP") int FP = 0; @DataPoint(description = "FP") int FP = 0;
@ -110,6 +109,7 @@ public class ValidationReport extends VariantEvaluator implements StandardEval {
counts[compStatus.ordinal()][evalStatus.ordinal()]++; counts[compStatus.ordinal()][evalStatus.ordinal()]++;
} }
} }
return null; // we don't capture any interesting sites return null; // we don't capture any interesting sites
} }