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Catch yet another class of User Errors

This commit is contained in:
Eric Banks 2012-07-30 11:59:56 -04:00
parent 5743694196
commit 0b30588d67
1 changed files with 6 additions and 0 deletions
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6
public/java/src/org/broadinstitute/sting/gatk/CommandLineGATK.java
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@ -131,6 +131,12 @@ public class CommandLineGATK extends CommandLineExecutable {
// can't close tribble index when writing // can't close tribble index when writing
if ( message.indexOf("Unable to close index for") != -1 ) if ( message.indexOf("Unable to close index for") != -1 )
exitSystemWithUserError(new UserException(t.getCause().getMessage())); exitSystemWithUserError(new UserException(t.getCause().getMessage()));
// disk is full
if ( message.indexOf("No space left on device") != -1 )
exitSystemWithUserError(new UserException(t.getMessage()));
if ( t.getCause().getMessage().indexOf("No space left on device") != -1 )
exitSystemWithUserError(new UserException(t.getCause().getMessage()));
} }
/** /**