diff --git a/java/src/org/broadinstitute/sting/utils/MannWhitneyU.java b/java/src/org/broadinstitute/sting/utils/MannWhitneyU.java index aab8a4c35..fac04db1d 100755 --- a/java/src/org/broadinstitute/sting/utils/MannWhitneyU.java +++ b/java/src/org/broadinstitute/sting/utils/MannWhitneyU.java @@ -305,8 +305,7 @@ public class MannWhitneyU { * @return same as cpr * @deprecated - for testing only (really) */ - @Deprecated - public static double calculatePRecursivelyDoNotCheckValuesEvenThoughItIsSlow(int n, int m, long u) { + protected static double calculatePRecursivelyDoNotCheckValuesEvenThoughItIsSlow(int n, int m, long u) { return cpr(n,m,u); } @@ -336,8 +335,7 @@ public class MannWhitneyU { * @return observations * @deprecated - only for testing */ - @Deprecated - public TreeSet> getObservations() { + protected TreeSet> getObservations() { return observations; } @@ -346,7 +344,7 @@ public class MannWhitneyU { * @return size set 1, size set 2 * @deprecated - only for testing */ - public Pair getSetSizes() { + protected Pair getSetSizes() { return new Pair(sizeSet1,sizeSet2); } diff --git a/java/test/org/broadinstitute/sting/oneoffprojects/walkers/RFAUnitTest.java b/java/test/org/broadinstitute/sting/utils/MWUnitTest.java similarity index 97% rename from java/test/org/broadinstitute/sting/oneoffprojects/walkers/RFAUnitTest.java rename to java/test/org/broadinstitute/sting/utils/MWUnitTest.java index 32b5e218a..72d67e8ff 100755 --- a/java/test/org/broadinstitute/sting/oneoffprojects/walkers/RFAUnitTest.java +++ b/java/test/org/broadinstitute/sting/utils/MWUnitTest.java @@ -1,4 +1,4 @@ -package org.broadinstitute.sting.oneoffprojects.walkers; +package org.broadinstitute.sting.utils; import net.sf.samtools.SAMRecord; import org.broadinstitute.sting.oneoffprojects.walkers.newassociation.features.ReadFeatureAggregator; @@ -17,7 +17,7 @@ import org.testng.Assert; * Time: 2:06 PM * To change this template use File | Settings | File Templates. */ -public class RFAUnitTest extends BaseTest { +public class MWUnitTest extends BaseTest { @BeforeClass public void init() { }