From 0a2e76e9dcd7f3f8fa2219d067f9dc0915e0b6da Mon Sep 17 00:00:00 2001 From: depristo Date: Thu, 7 Oct 2010 21:38:46 +0000 Subject: [PATCH] 2nd step towards on the fly indexing. Also fixed parsing bug for headers with < symbols git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4454 348d0f76-0448-11de-a6fe-93d51630548a --- .../VariantRecalibrationWalkersIntegrationTest.java | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/java/test/org/broadinstitute/sting/gatk/walkers/variantrecalibration/VariantRecalibrationWalkersIntegrationTest.java b/java/test/org/broadinstitute/sting/gatk/walkers/variantrecalibration/VariantRecalibrationWalkersIntegrationTest.java index f54c10e6d..7a5ea4ab6 100755 --- a/java/test/org/broadinstitute/sting/gatk/walkers/variantrecalibration/VariantRecalibrationWalkersIntegrationTest.java +++ b/java/test/org/broadinstitute/sting/gatk/walkers/variantrecalibration/VariantRecalibrationWalkersIntegrationTest.java @@ -83,7 +83,7 @@ public class VariantRecalibrationWalkersIntegrationTest extends WalkerTest { @Test public void testApplyVariantCuts() { HashMap e = new HashMap(); - e.put( validationDataLocation + "yri.trio.gatk_glftrio.intersection.annotated.filtered.chr1.vcf", "8e6528fba350e466f5b6c2858bc20556" ); + e.put( validationDataLocation + "yri.trio.gatk_glftrio.intersection.annotated.filtered.chr1.vcf", "646805c4619a15d3f9f4976b96b89ecd" ); e.put( validationDataLocation + "lowpass.N3.chr1.raw.vcf", "df9e37af16610ccd44d375eae2c4479c" ); for ( Map.Entry entry : e.entrySet() ) {