zzh
/
gatk-3.8
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity

2nd step towards on the fly indexing. Also fixed parsing bug for headers with < symbols 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4454 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
depristo 2010-10-07 21:38:46 +00:00
parent 7bb9704592
commit 0a2e76e9dc
1 changed files with 1 additions and 1 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

2
java/test/org/broadinstitute/sting/gatk/walkers/variantrecalibration/VariantRecalibrationWalkersIntegrationTest.java
View File

@ -83,7 +83,7 @@ public class VariantRecalibrationWalkersIntegrationTest extends WalkerTest {
@Test
public void testApplyVariantCuts() {
HashMap<String, String> e = new HashMap<String, String>();
e.put( validationDataLocation + "yri.trio.gatk_glftrio.intersection.annotated.filtered.chr1.vcf", "8e6528fba350e466f5b6c2858bc20556" );
e.put( validationDataLocation + "yri.trio.gatk_glftrio.intersection.annotated.filtered.chr1.vcf", "646805c4619a15d3f9f4976b96b89ecd" );
e.put( validationDataLocation + "lowpass.N3.chr1.raw.vcf", "df9e37af16610ccd44d375eae2c4479c" );
for ( Map.Entry<String, String> entry : e.entrySet() ) {