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fixing a broken test 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3647 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
aaron 2010-06-25 21:59:00 +00:00
parent d6cbe4d0ad
commit 09ccdf83b2
1 changed files with 1 additions and 1 deletions
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2
java/test/org/broadinstitute/sting/gatk/refdata/features/vcf4/VCF4UnitTest.java
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@ -190,7 +190,7 @@ public class VCF4UnitTest extends BaseTest {
// test too few info lines, we don't provide the DP in this line // test too few info lines, we don't provide the DP in this line
// test GT field in the incorrect position (!= 0) // test GT field in the incorrect position (!= 0)
String GTFieldInTheWrongPosition = "20\t14370\trs6054257\tG\tA\t29\tPASS\tNS=3;AF=0.5;DB;H2\tGQ:DP:HQ:GT\t48:1:51,51:0|0\t48:8:51,51:0|0\t43:5:0,0:0|0"; String GTFieldInTheWrongPosition = "20\t14370\trs6054257\tG\tA\t29\tPASS\tNS=3;AF=0.5;DB;H2\tGQ:DP:HQ:GT\t48:1:51,51:0|0\t48:8:51,51:0|0\t43:5:0,0:0|0";
@Test(expected=StingException.class) @Test(expected=RuntimeException.class)
public void testCheckGTFieldOrdering() { public void testCheckGTFieldOrdering() {
TestSetup testSetup = new TestSetup().invoke(vcfGenotypeFile); TestSetup testSetup = new TestSetup().invoke(vcfGenotypeFile);
testSetup.codec.decode(GTFieldInTheWrongPosition); testSetup.codec.decode(GTFieldInTheWrongPosition);