From 09ccdf83b2eeac9d0ef4c51e0c689c5c6ab2b1ad Mon Sep 17 00:00:00 2001 From: aaron Date: Fri, 25 Jun 2010 21:59:00 +0000 Subject: [PATCH] fixing a broken test git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3647 348d0f76-0448-11de-a6fe-93d51630548a --- .../sting/gatk/refdata/features/vcf4/VCF4UnitTest.java | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/java/test/org/broadinstitute/sting/gatk/refdata/features/vcf4/VCF4UnitTest.java b/java/test/org/broadinstitute/sting/gatk/refdata/features/vcf4/VCF4UnitTest.java index bd999067d..527f3e438 100644 --- a/java/test/org/broadinstitute/sting/gatk/refdata/features/vcf4/VCF4UnitTest.java +++ b/java/test/org/broadinstitute/sting/gatk/refdata/features/vcf4/VCF4UnitTest.java @@ -190,7 +190,7 @@ public class VCF4UnitTest extends BaseTest { // test too few info lines, we don't provide the DP in this line // test GT field in the incorrect position (!= 0) String GTFieldInTheWrongPosition = "20\t14370\trs6054257\tG\tA\t29\tPASS\tNS=3;AF=0.5;DB;H2\tGQ:DP:HQ:GT\t48:1:51,51:0|0\t48:8:51,51:0|0\t43:5:0,0:0|0"; - @Test(expected=StingException.class) + @Test(expected=RuntimeException.class) public void testCheckGTFieldOrdering() { TestSetup testSetup = new TestSetup().invoke(vcfGenotypeFile); testSetup.codec.decode(GTFieldInTheWrongPosition);