diff --git a/public/java/src/org/broadinstitute/sting/utils/codecs/vcf/AbstractVCFCodec.java b/public/java/src/org/broadinstitute/sting/utils/codecs/vcf/AbstractVCFCodec.java index 3a4ca2478..bb212e128 100755 --- a/public/java/src/org/broadinstitute/sting/utils/codecs/vcf/AbstractVCFCodec.java +++ b/public/java/src/org/broadinstitute/sting/utils/codecs/vcf/AbstractVCFCodec.java @@ -290,7 +290,6 @@ public abstract class AbstractVCFCodec implements FeatureCodec, NameAwareCodec, if ( !header.samplesWereAlreadySorted() ) vc.getGenotypes(); - // Trim bases of all alleles if necessary return vc; }