Updated to now longer include 2nd-best base output

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5567 348d0f76-0448-11de-a6fe-93d51630548a

java/test/org/broadinstitute/sting/gatk/walkers/PileupWalkerIntegrationTest.java

@@ -19,7 +19,7 @@ public class PileupWalkerIntegrationTest extends WalkerTest {
         String gatk_args = "-T Pileup -I " + validationDataLocation + "FHS_Pileup_Test.bam "
                  + "-R " + hg18Reference
                  +  " -L chr15:46,347,148 -o %s";
-        String expected_md5 = "872e89df166b90e06dd2737535c5d8b3";
+        String expected_md5 = "526c93b0fa660d6b953b57103e59fe98";
         WalkerTestSpec spec = new WalkerTestSpec(gatk_args, 1, Arrays.asList(expected_md5));
         executeTest("Testing the standard (no-indel) pileup on three merged FHS pools with 27 deletions in 969 bases", spec);
     }