From 08ca2ce89b0c0ab0322bb2de4d1923d095e6951c Mon Sep 17 00:00:00 2001
From: asivache <asivache@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Mon, 23 Mar 2009 14:39:15 +0000
Subject: [PATCH] fixing accidental incomplete commit

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@151 348d0f76-0448-11de-a6fe-93d51630548a
---
 .../src/org/broadinstitute/sting/indels/ConsensusSequence.java  | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/playground/java/src/org/broadinstitute/sting/indels/ConsensusSequence.java b/playground/java/src/org/broadinstitute/sting/indels/ConsensusSequence.java
index d1666fc2a..275b2fb34 100644
--- a/playground/java/src/org/broadinstitute/sting/indels/ConsensusSequence.java
+++ b/playground/java/src/org/broadinstitute/sting/indels/ConsensusSequence.java
@@ -146,7 +146,7 @@ public class ConsensusSequence {
                 base = BASES[z];
             }
         }
-        return base;
+        return new Pair<Character,Integer>(base,bmax);
     }