diff --git a/playground/java/src/org/broadinstitute/sting/indels/ConsensusSequence.java b/playground/java/src/org/broadinstitute/sting/indels/ConsensusSequence.java index d1666fc2a..275b2fb34 100644 --- a/playground/java/src/org/broadinstitute/sting/indels/ConsensusSequence.java +++ b/playground/java/src/org/broadinstitute/sting/indels/ConsensusSequence.java @@ -146,7 +146,7 @@ public class ConsensusSequence { base = BASES[z]; } } - return base; + return new Pair(base,bmax); }