From 089dab00e22325f409ae1bd84244bb834a6bf635 Mon Sep 17 00:00:00 2001 From: depristo Date: Fri, 7 Aug 2009 19:37:52 +0000 Subject: [PATCH] Was discordance rate, now concordance rate git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1393 348d0f76-0448-11de-a6fe-93d51630548a --- .../playground/gatk/walkers/varianteval/VariantDBCoverage.java | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/java/src/org/broadinstitute/sting/playground/gatk/walkers/varianteval/VariantDBCoverage.java b/java/src/org/broadinstitute/sting/playground/gatk/walkers/varianteval/VariantDBCoverage.java index 340f06e50..467a233bb 100755 --- a/java/src/org/broadinstitute/sting/playground/gatk/walkers/varianteval/VariantDBCoverage.java +++ b/java/src/org/broadinstitute/sting/playground/gatk/walkers/varianteval/VariantDBCoverage.java @@ -38,7 +38,7 @@ public class VariantDBCoverage extends BasicVariantAnalysis implements GenotypeA if (inDB && inEval) { nOverlapping++; - if ( discordantP(dbSNP, eval) ) + if ( ! discordantP(dbSNP, eval) ) nConcordant++; } }