From 089bf30cf4cafe846922b3f5f90f84e03e5c5c1a Mon Sep 17 00:00:00 2001
From: kiran <kiran@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Wed, 8 Apr 2009 21:49:03 +0000
Subject: [PATCH] Send things to the out file via the logger.

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@339 348d0f76-0448-11de-a6fe-93d51630548a
---
 .../sting/playground/gatk/walkers/ReadErrorRateWalker.java      | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/java/src/org/broadinstitute/sting/playground/gatk/walkers/ReadErrorRateWalker.java b/java/src/org/broadinstitute/sting/playground/gatk/walkers/ReadErrorRateWalker.java
index f4e149fc6..f854714a6 100755
--- a/java/src/org/broadinstitute/sting/playground/gatk/walkers/ReadErrorRateWalker.java
+++ b/java/src/org/broadinstitute/sting/playground/gatk/walkers/ReadErrorRateWalker.java
@@ -141,7 +141,7 @@ public class ReadErrorRateWalker extends ReadWalker<boolean[], int[]> {
     public void onTraversalDone(int[] sum) {
         for (int cycle = 0; cycle < sum.length - 1; cycle++) {
             double errorrate = ((double) sum[cycle])/((double) sum[sum.length - 1]);
-            System.out.println("[ERROR_RATE] " + cycle + " " + errorrate);
+            out.println("[ERROR_RATE] " + cycle + " " + errorrate);
         }
     }
 }