From 080875d5daf876ebd29b059c156890d7c349983f Mon Sep 17 00:00:00 2001
From: "Mark A. DePristo" <depristo@broadinstitute.org>
Date: Tue, 5 Jul 2011 16:13:39 -0400
Subject: [PATCH] Refactored DiffNode/DiffElement/DiffValue class structure. 
 DiffElement is now a pair of Name -> Value, where value is either a DiffValue
 or its subclass DiffNode.  Code cleaned up, more tests added.  DiffEngine is
 now working, with tests.  DiffObjectWalker can now take two VCFs and itemize
 the difference between the two files correctly and concisely.

---
 build.xml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/build.xml b/build.xml
index fe1723587..21066686f 100644
--- a/build.xml
+++ b/build.xml
@@ -741,8 +741,8 @@
                 <jvmarg value="-Dpipeline.run=${pipeline.run}" />
                 <jvmarg value="-Djava.io.tmpdir=${java.io.tmpdir}" />
                 <!-- needs to be if -->
-                <!--jvmarg value="-javaagent:lib/cofoja.jar"/-->
-                <!--jvmarg value="-Dcom.google.java.contract.log.contract=false"/-->
+<!--                 <jvmarg value="-javaagent:lib/cofoja.jar"/> -->
+<!--                 <jvmarg value="-Dcom.google.java.contract.log.contract=false"/> -->
 <!--                 <jvmarg value="-Xdebug"/> -->
 <!--                 <jvmarg value="-Xrunjdwp:transport=dt_socket,server=y,suspend=y,address=5005"/> -->
                 <classpath>