Refactored DiffNode/DiffElement/DiffValue class structure. DiffElement is now a pair of Name -> Value, where value is either a DiffValue or its subclass DiffNode. Code cleaned up, more tests added. DiffEngine is now working, with tests. DiffObjectWalker can now take two VCFs and itemize the difference between the two files correctly and concisely.
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<jvmarg value="-Dpipeline.run=${pipeline.run}" />
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<jvmarg value="-Djava.io.tmpdir=${java.io.tmpdir}" />
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<!-- needs to be if -->
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<!--jvmarg value="-javaagent:lib/cofoja.jar"/-->
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<!--jvmarg value="-Dcom.google.java.contract.log.contract=false"/-->
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<!-- <jvmarg value="-javaagent:lib/cofoja.jar"/> -->
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<!-- <jvmarg value="-Dcom.google.java.contract.log.contract=false"/> -->
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<!-- <jvmarg value="-Xdebug"/> -->
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<!-- <jvmarg value="-Xrunjdwp:transport=dt_socket,server=y,suspend=y,address=5005"/> -->
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<classpath>
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