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Set VariantFiltration's JEXL engine to silent for warning messages 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3716 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
ebanks 2010-07-04 18:11:19 +00:00
parent be8740b00d
commit 07945040f8
1 changed files with 2 additions and 0 deletions
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2
java/src/org/broadinstitute/sting/gatk/walkers/filters/VariantFiltrationWalker.java
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@ -120,6 +120,8 @@ public class VariantFiltrationWalker extends RodWalker<Integer, Integer> {
filterExps = VariantContextUtils.initializeMatchExps(FILTER_NAMES, FILTER_EXPS); filterExps = VariantContextUtils.initializeMatchExps(FILTER_NAMES, FILTER_EXPS);
genotypeFilterExps = VariantContextUtils.initializeMatchExps(GENOTYPE_FILTER_NAMES, GENOTYPE_FILTER_EXPS); genotypeFilterExps = VariantContextUtils.initializeMatchExps(GENOTYPE_FILTER_NAMES, GENOTYPE_FILTER_EXPS);
VariantContextUtils.engine.setSilent(true);
} }
public Integer reduceInit() { return 0; } public Integer reduceInit() { return 0; }