diff --git a/java/src/org/broadinstitute/sting/gatk/walkers/filters/VariantFiltrationWalker.java b/java/src/org/broadinstitute/sting/gatk/walkers/filters/VariantFiltrationWalker.java index 72c8457dc..a2382738b 100755 --- a/java/src/org/broadinstitute/sting/gatk/walkers/filters/VariantFiltrationWalker.java +++ b/java/src/org/broadinstitute/sting/gatk/walkers/filters/VariantFiltrationWalker.java @@ -120,6 +120,8 @@ public class VariantFiltrationWalker extends RodWalker { filterExps = VariantContextUtils.initializeMatchExps(FILTER_NAMES, FILTER_EXPS); genotypeFilterExps = VariantContextUtils.initializeMatchExps(GENOTYPE_FILTER_NAMES, GENOTYPE_FILTER_EXPS); + + VariantContextUtils.engine.setSilent(true); } public Integer reduceInit() { return 0; }