From 06b63d8336837f91bf89b3bbb7fe32857afb06d9 Mon Sep 17 00:00:00 2001 From: hanna Date: Tue, 1 Feb 2011 18:36:09 +0000 Subject: [PATCH] Pulled out CpG stratification in test results at Kiran's suggestion. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5165 348d0f76-0448-11de-a6fe-93d51630548a --- .../walkers/variantutils/VCFStreamingIntegrationTest.java | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/java/test/org/broadinstitute/sting/gatk/walkers/variantutils/VCFStreamingIntegrationTest.java b/java/test/org/broadinstitute/sting/gatk/walkers/variantutils/VCFStreamingIntegrationTest.java index 275345fa8..460f2781f 100644 --- a/java/test/org/broadinstitute/sting/gatk/walkers/variantutils/VCFStreamingIntegrationTest.java +++ b/java/test/org/broadinstitute/sting/gatk/walkers/variantutils/VCFStreamingIntegrationTest.java @@ -95,10 +95,10 @@ public class VCFStreamingIntegrationTest extends WalkerTest { " -R " + b36KGReference + " -B:eval,vcf " + testFile + " -B:comp,vcf,storage=STREAM " + tmpFifo.getAbsolutePath() + - " -EV CompOverlap -noEV" + + " -EV CompOverlap -noEV -noST" + " -o %s", 1, - Arrays.asList("99b4edbd70e6540f39c929b435ecd8e7") + Arrays.asList("df096bd7e33fd3ec9d8527ee2379bddc") ); executeTest("testVCFStreamingChain", selectTestSpec);