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Update MD5s to reflect new limited output of DiffObjectsWalkers 

-- Also updated GQ change in VCFIntegrationTest
This commit is contained in:
Mark DePristo 2012-05-27 11:20:47 -04:00
parent 5894d045cb
commit 06b02e1b9b
2 changed files with 3 additions and 3 deletions
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4
public/java/test/org/broadinstitute/sting/gatk/walkers/diffengine/DiffObjectsIntegrationTest.java
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@ -50,8 +50,8 @@ public class DiffObjectsIntegrationTest extends WalkerTest {
@DataProvider(name = "data") @DataProvider(name = "data")
public Object[][] createData() { public Object[][] createData() {
new TestParams(testDir + "diffTestMaster.vcf", testDir + "diffTestTest.vcf", "aeb2283178d162555de18524fb127c84"); new TestParams(testDir + "diffTestMaster.vcf", testDir + "diffTestTest.vcf", "daead9bfab1a5df72c5e3a239366118e");
new TestParams(testDir + "exampleBAM.bam", testDir + "exampleBAM.simple.bam", "a43f6f2e209efe2d754c4d2104ca2156"); new TestParams(testDir + "exampleBAM.bam", testDir + "exampleBAM.simple.bam", "3f46f5a964f7c34015d972256fe49a35");
return TestParams.getTests(TestParams.class); return TestParams.getTests(TestParams.class);
} }

2
public/java/test/org/broadinstitute/sting/utils/codecs/vcf/VCFIntegrationTest.java
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@ -12,7 +12,7 @@ public class VCFIntegrationTest extends WalkerTest {
@Test(enabled = true) @Test(enabled = true)
public void testReadingAndWritingWitHNoChanges() { public void testReadingAndWritingWitHNoChanges() {
String md5ofInputVCF = "a990ba187a69ca44cb9bc2bb44d00447"; String md5ofInputVCF = "ca5912c87813b21e980938fb75247bc6";
String testVCF = testDir + "vcf4.1.example.vcf"; String testVCF = testDir + "vcf4.1.example.vcf";
String baseCommand = "-R " + b37KGReference + " --no_cmdline_in_header -o %s "; String baseCommand = "-R " + b37KGReference + " --no_cmdline_in_header -o %s ";