From 06b02e1b9b0a1a5c0dd6931070c2a21557f66825 Mon Sep 17 00:00:00 2001 From: Mark DePristo Date: Sun, 27 May 2012 11:20:47 -0400 Subject: [PATCH] Update MD5s to reflect new limited output of DiffObjectsWalkers -- Also updated GQ change in VCFIntegrationTest --- .../gatk/walkers/diffengine/DiffObjectsIntegrationTest.java | 4 ++-- .../sting/utils/codecs/vcf/VCFIntegrationTest.java | 2 +- 2 files changed, 3 insertions(+), 3 deletions(-) diff --git a/public/java/test/org/broadinstitute/sting/gatk/walkers/diffengine/DiffObjectsIntegrationTest.java b/public/java/test/org/broadinstitute/sting/gatk/walkers/diffengine/DiffObjectsIntegrationTest.java index 04fd26b14..66fec35e6 100644 --- a/public/java/test/org/broadinstitute/sting/gatk/walkers/diffengine/DiffObjectsIntegrationTest.java +++ b/public/java/test/org/broadinstitute/sting/gatk/walkers/diffengine/DiffObjectsIntegrationTest.java @@ -50,8 +50,8 @@ public class DiffObjectsIntegrationTest extends WalkerTest { @DataProvider(name = "data") public Object[][] createData() { - new TestParams(testDir + "diffTestMaster.vcf", testDir + "diffTestTest.vcf", "aeb2283178d162555de18524fb127c84"); - new TestParams(testDir + "exampleBAM.bam", testDir + "exampleBAM.simple.bam", "a43f6f2e209efe2d754c4d2104ca2156"); + new TestParams(testDir + "diffTestMaster.vcf", testDir + "diffTestTest.vcf", "daead9bfab1a5df72c5e3a239366118e"); + new TestParams(testDir + "exampleBAM.bam", testDir + "exampleBAM.simple.bam", "3f46f5a964f7c34015d972256fe49a35"); return TestParams.getTests(TestParams.class); } diff --git a/public/java/test/org/broadinstitute/sting/utils/codecs/vcf/VCFIntegrationTest.java b/public/java/test/org/broadinstitute/sting/utils/codecs/vcf/VCFIntegrationTest.java index 85fbbace2..cabb825ef 100644 --- a/public/java/test/org/broadinstitute/sting/utils/codecs/vcf/VCFIntegrationTest.java +++ b/public/java/test/org/broadinstitute/sting/utils/codecs/vcf/VCFIntegrationTest.java @@ -12,7 +12,7 @@ public class VCFIntegrationTest extends WalkerTest { @Test(enabled = true) public void testReadingAndWritingWitHNoChanges() { - String md5ofInputVCF = "a990ba187a69ca44cb9bc2bb44d00447"; + String md5ofInputVCF = "ca5912c87813b21e980938fb75247bc6"; String testVCF = testDir + "vcf4.1.example.vcf"; String baseCommand = "-R " + b37KGReference + " --no_cmdline_in_header -o %s ";