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Changed DoC from PartitionType.INTERVAL to PartitionType.NONE since it doesn't have a way to gather scattered outputs. 

Added MultiallelicSummary to HSP eval.
This commit is contained in:
Khalid Shakir 2012-02-28 09:25:38 -05:00
parent bd398e30fd
commit 0681bea5a5
1 changed files with 1 additions and 1 deletions
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public/java/src/org/broadinstitute/sting/gatk/walkers/coverage/DepthOfCoverageWalker.java
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@ -114,7 +114,7 @@ import java.util.*;
// todo -- allow for user to set linear binning (default is logarithmic)
// todo -- formatting --> do something special for end bins in getQuantile(int[] foo), this gets mushed into the end+-1 bins for now
@By(DataSource.REFERENCE)
@PartitionBy(PartitionType.INTERVAL)
@PartitionBy(PartitionType.NONE)
public class DepthOfCoverageWalker extends LocusWalker<Map<DoCOutputType.Partition,Map<String,int[]>>, CoveragePartitioner> implements TreeReducible<CoveragePartitioner> {
@Output
@Multiplex(value=DoCOutputMultiplexer.class,arguments={"partitionTypes","refSeqGeneList","omitDepthOutput","omitIntervals","omitSampleSummary","omitLocusTable"})