From 06703162882253b63a5a3b23cbc681ae8e5fa97d Mon Sep 17 00:00:00 2001
From: Mark DePristo <depristo@broadinstitute.org>
Date: Thu, 26 Jul 2012 16:51:17 -0400
Subject: [PATCH] Be clearer that dcov 50 is good for 4x, should use 200 for
 >30x

---
 .../sting/gatk/walkers/genotyper/UnifiedGenotyper.java          | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/public/java/src/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyper.java b/public/java/src/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyper.java
index cd1815d82..6b279fd95 100755
--- a/public/java/src/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyper.java
+++ b/public/java/src/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyper.java
@@ -82,7 +82,7 @@ import java.util.*;
  *   -o snps.raw.vcf \
  *   -stand_call_conf [50.0] \
  *   -stand_emit_conf 10.0 \
- *   -dcov [50] \
+ *   -dcov [50 for 4x, 200 for >30x WGS or Whole exome] \
  *   [-L targets.interval_list]
  * </pre>
  *