Be clearer that dcov 50 is good for 4x, should use 200 for >30x

2012-07-26 16:51:17 -04:00 · 2012-07-26 16:51:17 -04:00 · 0670316288
parent 8db4e787b1
commit 0670316288
1 changed files with 1 additions and 1 deletions
--- a/public/java/src/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyper.java
+++ b/public/java/src/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyper.java
@ -82,7 +82,7 @@ import java.util.*;
 *   -o snps.raw.vcf \
 *   -stand_call_conf [50.0] \
 *   -stand_emit_conf 10.0 \
- *   -dcov [50] \
+ *   -dcov [50 for 4x, 200 for >30x WGS or Whole exome] \
 *   [-L targets.interval_list]
 * </pre>
 *