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changing the default behavior to allow any sized read pile-up (which may exceed the memory limit); the user can then select their own read limit. The default of 100K was arbitrary. 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1498 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
aaron 2009-09-01 14:46:00 +00:00
parent 54c0b6c430
commit 05c164ec69
1 changed files with 2 additions and 2 deletions
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4
java/src/org/broadinstitute/sting/gatk/GATKArgumentCollection.java
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@ -122,8 +122,8 @@ public class GATKArgumentCollection {
public Boolean unsafe = false;
@Element(required = false)
@Argument(fullName = "max_reads_at_locus", shortName = "mrl", doc = "Sets the upper limit for the number of reads presented at a single locus. 100,000 by default.", required = false)
public int readMaxPileup = 100000;
@Argument(fullName = "max_reads_at_locus", shortName = "mrl", doc = "Sets the upper limit for the number of reads presented at a single locus. int.MAX_VALUE by default.", required = false)
public int readMaxPileup = Integer.MAX_VALUE;
@Element(required = false)
@Argument(fullName = "disablethreading", shortName = "dt", doc = "Disable experimental threading support.", required = false)