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This argument should be annotated as @Input

This commit is contained in:
Eric Banks 2011-10-28 09:44:49 -04:00
parent 4ba7c0cecd
commit 057a79f598
1 changed files with 1 additions and 1 deletions
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public/java/src/org/broadinstitute/sting/gatk/walkers/indels/SomaticIndelDetectorWalker.java
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@ -130,7 +130,7 @@ public class SomaticIndelDetectorWalker extends ReadWalker<Integer,Integer> {
// boolean FORMAT_VCF = false; // boolean FORMAT_VCF = false;
@Hidden @Hidden
@Argument(fullName = "genotype_intervals", shortName = "genotype", @Input(fullName = "genotype_intervals", shortName = "genotype",
doc = "Calls will be made at each position within the specified interval(s), whether there is an indel or not", required = false) doc = "Calls will be made at each position within the specified interval(s), whether there is an indel or not", required = false)
public IntervalBinding<Feature> genotypeIntervalsFile = null; public IntervalBinding<Feature> genotypeIntervalsFile = null;