diff --git a/public/java/src/org/broadinstitute/sting/gatk/walkers/indels/SomaticIndelDetectorWalker.java b/public/java/src/org/broadinstitute/sting/gatk/walkers/indels/SomaticIndelDetectorWalker.java index 5a99f26f0..50ec9fe74 100644 --- a/public/java/src/org/broadinstitute/sting/gatk/walkers/indels/SomaticIndelDetectorWalker.java +++ b/public/java/src/org/broadinstitute/sting/gatk/walkers/indels/SomaticIndelDetectorWalker.java @@ -130,7 +130,7 @@ public class SomaticIndelDetectorWalker extends ReadWalker { // boolean FORMAT_VCF = false; @Hidden - @Argument(fullName = "genotype_intervals", shortName = "genotype", + @Input(fullName = "genotype_intervals", shortName = "genotype", doc = "Calls will be made at each position within the specified interval(s), whether there is an indel or not", required = false) public IntervalBinding genotypeIntervalsFile = null;