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Merge pull request #457 from broadinstitute/eb_rev_variant_for_doc_updates 

Updating variant jar.
This commit is contained in:
Eric Banks 2013-12-31 20:49:20 -08:00
parent 5a1564d1f2 f82a7c3f4c
commit 050ca8ae09
3 changed files with 6 additions and 6 deletions
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10
public/java/src/org/broadinstitute/sting/utils/variant/GATKVariantContextUtils.java
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@ -1152,11 +1152,11 @@ public class GATKVariantContextUtils {
* @param builder the VC builder
*/
private static void removeStaleAttributesAfterMerge(final VariantContextBuilder builder) {
builder.rmAttribute(VCFConstants.ALLELE_COUNT_KEY);
builder.rmAttribute(VCFConstants.ALLELE_FREQUENCY_KEY);
builder.rmAttribute(VCFConstants.ALLELE_NUMBER_KEY);
builder.rmAttribute(VCFConstants.MLE_ALLELE_COUNT_KEY);
builder.rmAttribute(VCFConstants.MLE_ALLELE_FREQUENCY_KEY);
builder.rmAttributes(Arrays.asList(VCFConstants.ALLELE_COUNT_KEY,
VCFConstants.ALLELE_FREQUENCY_KEY,
VCFConstants.ALLELE_NUMBER_KEY,
VCFConstants.MLE_ALLELE_COUNT_KEY,
VCFConstants.MLE_ALLELE_FREQUENCY_KEY));
}
/**

BIN
settings/repository/org.broadinstitute/variant-1.104.1634.jar → settings/repository/org.broadinstitute/variant-1.105.1640.jar
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2
settings/repository/org.broadinstitute/variant-1.104.1634.xml → settings/repository/org.broadinstitute/variant-1.105.1640.xml
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@ -1,3 +1,3 @@
<ivy-module version="1.0">
<info organisation="org.broadinstitute" module="variant" revision="1.104.1634" status="integration" />
<info organisation="org.broadinstitute" module="variant" revision="1.105.1640" status="integration" />
</ivy-module>