Improvements to the Random Forest pipeline based on Marathon results.

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-- We no longer use QUAL because it scales insidiously with AC.
-- By default we exclude sites in which NA12878 is polymorphic to prevent overfitting to the knowledgebase.
-- Tweaks to training parameters were required because of the QUAL change.
-- We now test for model convergence instead of specifying the number of iterations at the command line.

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Ryan Poplin 2014-04-08 10:39:18 -04:00

parent 6d58e61f23

commit 04ddbac585

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