From 04d6ac940c8634835cb77f9c43d505ac367fd7fa Mon Sep 17 00:00:00 2001
From: ebanks <ebanks@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Mon, 23 Nov 2009 01:44:10 +0000
Subject: [PATCH] Always print out VCF header - not just when there is genotype
 data present.

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2114 348d0f76-0448-11de-a6fe-93d51630548a
---
 .../org/broadinstitute/sting/utils/genotype/vcf/VCFWriter.java  | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/java/src/org/broadinstitute/sting/utils/genotype/vcf/VCFWriter.java b/java/src/org/broadinstitute/sting/utils/genotype/vcf/VCFWriter.java
index 7d7d173f5..34bbc0de1 100644
--- a/java/src/org/broadinstitute/sting/utils/genotype/vcf/VCFWriter.java
+++ b/java/src/org/broadinstitute/sting/utils/genotype/vcf/VCFWriter.java
@@ -60,8 +60,8 @@ public class VCFWriter {
             if (header.hasGenotypingData()) {
                 b.append("FORMAT" + FIELD_SEPERATOR);
                 for (String field : header.getGenotypeSamples()) b.append(field + FIELD_SEPERATOR);
-                mWriter.write(b.toString() + "\n");
             }
+            mWriter.write(b.toString() + "\n");
         }
         catch (IOException e) {
             throw new RuntimeException("IOException writing the VCF header", e);