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Updated integration test's MD5s reflect the fact that assay sequences were previously designed incorrectly for indels, the bug is now fixed. 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5120 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
asivache 2011-01-28 23:00:22 +00:00
parent 5934b9cb82
commit 04d66a7d0d
1 changed files with 3 additions and 3 deletions
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6
java/test/org/broadinstitute/sting/gatk/walkers/sequenom/PickSequenomProbesIntegrationTest.java
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@ -11,7 +11,7 @@ public class PickSequenomProbesIntegrationTest extends WalkerTest {
String testVCF = validationDataLocation + "complexExample.vcf4"; String testVCF = validationDataLocation + "complexExample.vcf4";
String testArgs = "-R " + b36KGReference + " -T PickSequenomProbes -L 1:10,000,000-11,000,000 -B:input,VCF "+testVCF+" -o %s"; String testArgs = "-R " + b36KGReference + " -T PickSequenomProbes -L 1:10,000,000-11,000,000 -B:input,VCF "+testVCF+" -o %s";
WalkerTestSpec spec = new WalkerTestSpec(testArgs, 1, WalkerTestSpec spec = new WalkerTestSpec(testArgs, 1,
Arrays.asList("0f356354a4a78ff62b2848431ec11262")); Arrays.asList("6b5409cc78960f1be855536ed89ea9dd"));
executeTest("Test probes", spec); executeTest("Test probes", spec);
} }
@ -23,7 +23,7 @@ public class PickSequenomProbesIntegrationTest extends WalkerTest {
+ "-project_id 1kgp3_s4_lf -T PickSequenomProbes -L " + validationDataLocation + + "-project_id 1kgp3_s4_lf -T PickSequenomProbes -L " + validationDataLocation +
"pickSeqIntegrationTest.interval_list -B:input,VCF "+testVCF+" -o %s"; "pickSeqIntegrationTest.interval_list -B:input,VCF "+testVCF+" -o %s";
WalkerTestSpec spec = new WalkerTestSpec(testArgs, 1, WalkerTestSpec spec = new WalkerTestSpec(testArgs, 1,
Arrays.asList("0ab37fe4db3fef345815c56e57e75cec")); Arrays.asList("e50162490d0597c8f00d2d20b1463661"));
executeTest("Test probes", spec); executeTest("Test probes", spec);
} }
@ -35,7 +35,7 @@ public class PickSequenomProbesIntegrationTest extends WalkerTest {
+ "-nmw 1 -project_id 1kgp3_s4_lf -T PickSequenomProbes -L " + validationDataLocation + + "-nmw 1 -project_id 1kgp3_s4_lf -T PickSequenomProbes -L " + validationDataLocation +
"pickSeqIntegrationTest.interval_list -B:input,VCF "+testVCF+" -o %s"; "pickSeqIntegrationTest.interval_list -B:input,VCF "+testVCF+" -o %s";
WalkerTestSpec spec = new WalkerTestSpec(testArgs, 1, WalkerTestSpec spec = new WalkerTestSpec(testArgs, 1,
Arrays.asList("8f0bc8954069c659c203cbb53d4dbad2")); Arrays.asList("e50162490d0597c8f00d2d20b1463661"));
executeTest("Test probes", spec); executeTest("Test probes", spec);
} }
} }