From 04d66a7d0de978fd25cdde8ad2cc1298bd85c07c Mon Sep 17 00:00:00 2001 From: asivache Date: Fri, 28 Jan 2011 23:00:22 +0000 Subject: [PATCH] Updated integration test's MD5s reflect the fact that assay sequences were previously designed incorrectly for indels, the bug is now fixed. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5120 348d0f76-0448-11de-a6fe-93d51630548a --- .../walkers/sequenom/PickSequenomProbesIntegrationTest.java | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/java/test/org/broadinstitute/sting/gatk/walkers/sequenom/PickSequenomProbesIntegrationTest.java b/java/test/org/broadinstitute/sting/gatk/walkers/sequenom/PickSequenomProbesIntegrationTest.java index ab1cf0812..3f6688fbf 100755 --- a/java/test/org/broadinstitute/sting/gatk/walkers/sequenom/PickSequenomProbesIntegrationTest.java +++ b/java/test/org/broadinstitute/sting/gatk/walkers/sequenom/PickSequenomProbesIntegrationTest.java @@ -11,7 +11,7 @@ public class PickSequenomProbesIntegrationTest extends WalkerTest { String testVCF = validationDataLocation + "complexExample.vcf4"; String testArgs = "-R " + b36KGReference + " -T PickSequenomProbes -L 1:10,000,000-11,000,000 -B:input,VCF "+testVCF+" -o %s"; WalkerTestSpec spec = new WalkerTestSpec(testArgs, 1, - Arrays.asList("0f356354a4a78ff62b2848431ec11262")); + Arrays.asList("6b5409cc78960f1be855536ed89ea9dd")); executeTest("Test probes", spec); } @@ -23,7 +23,7 @@ public class PickSequenomProbesIntegrationTest extends WalkerTest { + "-project_id 1kgp3_s4_lf -T PickSequenomProbes -L " + validationDataLocation + "pickSeqIntegrationTest.interval_list -B:input,VCF "+testVCF+" -o %s"; WalkerTestSpec spec = new WalkerTestSpec(testArgs, 1, - Arrays.asList("0ab37fe4db3fef345815c56e57e75cec")); + Arrays.asList("e50162490d0597c8f00d2d20b1463661")); executeTest("Test probes", spec); } @@ -35,7 +35,7 @@ public class PickSequenomProbesIntegrationTest extends WalkerTest { + "-nmw 1 -project_id 1kgp3_s4_lf -T PickSequenomProbes -L " + validationDataLocation + "pickSeqIntegrationTest.interval_list -B:input,VCF "+testVCF+" -o %s"; WalkerTestSpec spec = new WalkerTestSpec(testArgs, 1, - Arrays.asList("8f0bc8954069c659c203cbb53d4dbad2")); + Arrays.asList("e50162490d0597c8f00d2d20b1463661")); executeTest("Test probes", spec); } }