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Merged bug fix from Stable into Unstable

This commit is contained in:
Mauricio Carneiro 2011-07-01 16:04:50 -04:00
parent 350a76d5dd d19351f71a
commit 04971aecc9
1 changed files with 4 additions and 4 deletions
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4
public/scala/qscript/org/broadinstitute/sting/queue/qscripts/RecalibrateBaseQualities.scala
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@ -41,8 +41,8 @@ class RecalibrateBaseQualities extends QScript {
nContigs = getNumberOfContigs(input) nContigs = getNumberOfContigs(input)
val recalFile1: File = new File("recal1.csv") val recalFile1: File = swapExt(input, ".bam", "recal1.csv")
val recalFile2: File = new File("recal2.csv") val recalFile2: File = swapExt(input, ".bam", "recal2.csv")
val recalBam: File = swapExt(input, ".bam", "recal.bam") val recalBam: File = swapExt(input, ".bam", "recal.bam")
val path1: String = "before" val path1: String = "before"
val path2: String = "after" val path2: String = "after"