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Fixed epic generic paths fail. 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3359 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
hanna 2010-05-13 15:59:57 +00:00
parent 7ef87e5126
commit 0490909285
1 changed files with 3 additions and 3 deletions
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6
java/test/org/broadinstitute/sting/gatk/walkers/qc/ValidatingPileupIntegrationTest.java
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@ -16,9 +16,9 @@ public class ValidatingPileupIntegrationTest extends WalkerTest {
public void testEcoliThreaded() { public void testEcoliThreaded() {
WalkerTest.WalkerTestSpec spec = new WalkerTest.WalkerTestSpec( WalkerTest.WalkerTestSpec spec = new WalkerTest.WalkerTestSpec(
"-T ValidatingPileup" + "-T ValidatingPileup" +
" -I /humgen/gsa-scr1/GATK_Data/Validation_Data/MV1994.selected.bam" + " -I " + validationDataLocation + "MV1994.selected.bam" +
" -R /humgen/gsa-scr1/GATK_Data/Validation_Data/Escherichia_coli_K12_MG1655.fasta" + " -R " + validationDataLocation + "Escherichia_coli_K12_MG1655.fasta" +
" -B pileup,SAMPileup,/humgen/gsa-scr1/GATK_Data/Validation_Data/MV1994.selected.pileup" + " -B pileup,SAMPileup,"+ validationDataLocation + "MV1994.selected.pileup" +
" -S SILENT -nt 8",0, Collections.<String>emptyList()); " -S SILENT -nt 8",0, Collections.<String>emptyList());
executeTest("testEcoliThreaded",spec); executeTest("testEcoliThreaded",spec);
} }