From 04909092856d74cd9b6fd9faaccf79cc7defa3e6 Mon Sep 17 00:00:00 2001
From: hanna <hanna@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Thu, 13 May 2010 15:59:57 +0000
Subject: [PATCH] Fixed epic generic paths fail.

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3359 348d0f76-0448-11de-a6fe-93d51630548a
---
 .../gatk/walkers/qc/ValidatingPileupIntegrationTest.java    | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/java/test/org/broadinstitute/sting/gatk/walkers/qc/ValidatingPileupIntegrationTest.java b/java/test/org/broadinstitute/sting/gatk/walkers/qc/ValidatingPileupIntegrationTest.java
index 72e03346e..9d26129cc 100644
--- a/java/test/org/broadinstitute/sting/gatk/walkers/qc/ValidatingPileupIntegrationTest.java
+++ b/java/test/org/broadinstitute/sting/gatk/walkers/qc/ValidatingPileupIntegrationTest.java
@@ -16,9 +16,9 @@ public class ValidatingPileupIntegrationTest extends WalkerTest {
     public void testEcoliThreaded() {
         WalkerTest.WalkerTestSpec spec = new WalkerTest.WalkerTestSpec(
                 "-T ValidatingPileup" +
-                " -I /humgen/gsa-scr1/GATK_Data/Validation_Data/MV1994.selected.bam" +
-                " -R /humgen/gsa-scr1/GATK_Data/Validation_Data/Escherichia_coli_K12_MG1655.fasta" +
-                " -B pileup,SAMPileup,/humgen/gsa-scr1/GATK_Data/Validation_Data/MV1994.selected.pileup" +
+                " -I " + validationDataLocation + "MV1994.selected.bam" +
+                " -R " + validationDataLocation + "Escherichia_coli_K12_MG1655.fasta" +
+                " -B pileup,SAMPileup,"+ validationDataLocation + "MV1994.selected.pileup" +
                 " -S SILENT -nt 8",0, Collections.<String>emptyList());
         executeTest("testEcoliThreaded",spec);
     }