diff --git a/java/test/org/broadinstitute/sting/gatk/walkers/qc/ValidatingPileupIntegrationTest.java b/java/test/org/broadinstitute/sting/gatk/walkers/qc/ValidatingPileupIntegrationTest.java index 72e03346e..9d26129cc 100644 --- a/java/test/org/broadinstitute/sting/gatk/walkers/qc/ValidatingPileupIntegrationTest.java +++ b/java/test/org/broadinstitute/sting/gatk/walkers/qc/ValidatingPileupIntegrationTest.java @@ -16,9 +16,9 @@ public class ValidatingPileupIntegrationTest extends WalkerTest { public void testEcoliThreaded() { WalkerTest.WalkerTestSpec spec = new WalkerTest.WalkerTestSpec( "-T ValidatingPileup" + - " -I /humgen/gsa-scr1/GATK_Data/Validation_Data/MV1994.selected.bam" + - " -R /humgen/gsa-scr1/GATK_Data/Validation_Data/Escherichia_coli_K12_MG1655.fasta" + - " -B pileup,SAMPileup,/humgen/gsa-scr1/GATK_Data/Validation_Data/MV1994.selected.pileup" + + " -I " + validationDataLocation + "MV1994.selected.bam" + + " -R " + validationDataLocation + "Escherichia_coli_K12_MG1655.fasta" + + " -B pileup,SAMPileup,"+ validationDataLocation + "MV1994.selected.pileup" + " -S SILENT -nt 8",0, Collections.emptyList()); executeTest("testEcoliThreaded",spec); }