From 0398ae9695be356f98b0ed0d4d0dcafd772023dd Mon Sep 17 00:00:00 2001
From: Eric Banks <ebanks@broadinstitute.org>
Date: Thu, 14 Jun 2012 15:19:27 -0400
Subject: [PATCH] I hate these disabled unit tests, #2

---
 .../sting/gatk/walkers/bqsr/ContextCovariateUnitTest.java     | 2 +-
 .../sting/gatk/walkers/bqsr/ReadGroupCovariateUnitTest.java   | 4 +---
 2 files changed, 2 insertions(+), 4 deletions(-)

diff --git a/public/java/test/org/broadinstitute/sting/gatk/walkers/bqsr/ContextCovariateUnitTest.java b/public/java/test/org/broadinstitute/sting/gatk/walkers/bqsr/ContextCovariateUnitTest.java
index 1f5fc6b4f..f9392cd74 100644
--- a/public/java/test/org/broadinstitute/sting/gatk/walkers/bqsr/ContextCovariateUnitTest.java
+++ b/public/java/test/org/broadinstitute/sting/gatk/walkers/bqsr/ContextCovariateUnitTest.java
@@ -34,7 +34,7 @@ public class ContextCovariateUnitTest {
         verifyCovariateArray(values.getDeletions(),  RAC.DELETIONS_CONTEXT_SIZE,  clippedRead, covariate);
     }
 
-    public static void verifyCovariateArray(Long[] values, int contextSize, GATKSAMRecord read, Covariate contextCovariate) {
+    public static void verifyCovariateArray(long[] values, int contextSize, GATKSAMRecord read, Covariate contextCovariate) {
         for (int i = 0; i < values.length; i++)
             Assert.assertEquals(contextCovariate.formatKey(values[i]), expectedContext(read, i, contextSize));
 
diff --git a/public/java/test/org/broadinstitute/sting/gatk/walkers/bqsr/ReadGroupCovariateUnitTest.java b/public/java/test/org/broadinstitute/sting/gatk/walkers/bqsr/ReadGroupCovariateUnitTest.java
index 9571af122..0f910130b 100644
--- a/public/java/test/org/broadinstitute/sting/gatk/walkers/bqsr/ReadGroupCovariateUnitTest.java
+++ b/public/java/test/org/broadinstitute/sting/gatk/walkers/bqsr/ReadGroupCovariateUnitTest.java
@@ -7,8 +7,6 @@ import org.testng.Assert;
 import org.testng.annotations.BeforeClass;
 import org.testng.annotations.Test;
 
-import java.util.BitSet;
-
 /**
  * @author Mauricio Carneiro
  * @since 3/1/12
@@ -47,7 +45,7 @@ public class ReadGroupCovariateUnitTest {
 
     }
 
-    private void verifyCovariateArray(Long[] values, String expected) {
+    private void verifyCovariateArray(long[] values, String expected) {
         for (Long value : values) {
             String actual = covariate.formatKey(value);
             Assert.assertEquals(actual, expected);