diff --git a/public/java/test/org/broadinstitute/sting/utils/interval/IntervalIntegrationTest.java b/public/java/test/org/broadinstitute/sting/utils/interval/IntervalIntegrationTest.java index 75bdc3142..3fb330853 100644 --- a/public/java/test/org/broadinstitute/sting/utils/interval/IntervalIntegrationTest.java +++ b/public/java/test/org/broadinstitute/sting/utils/interval/IntervalIntegrationTest.java @@ -162,6 +162,20 @@ public class IntervalIntegrationTest extends WalkerTest { executeTest("testMixedIntervalMerging", spec); } + @Test(enabled = true) + public void testBed() { + String md5 = "cf4278314ef8e4b996e1b798d8eb92cf"; + WalkerTest.WalkerTestSpec spec = new WalkerTest.WalkerTestSpec( + "-T CountLoci" + + " -I " + validationDataLocation + "OV-0930.normal.chunk.bam" + + " -R " + hg18Reference + + " -o %s" + + " -L " + validationDataLocation + "intervalTest.bed", + 1, // just one output file + Arrays.asList(md5)); + executeTest("testBed", spec); + } + @Test(enabled = true) public void testComplexVCF() { String md5 = "166d77ac1b46a1ec38aa35ab7e628ab5";