diff --git a/java/src/org/broadinstitute/sting/gatk/walkers/indels/IndelRealigner.java b/java/src/org/broadinstitute/sting/gatk/walkers/indels/IndelRealigner.java
index dcb87b79a..705dcdad7 100755
--- a/java/src/org/broadinstitute/sting/gatk/walkers/indels/IndelRealigner.java
+++ b/java/src/org/broadinstitute/sting/gatk/walkers/indels/IndelRealigner.java
@@ -183,7 +183,7 @@ public class IndelRealigner extends ReadWalker<Integer, Integer> {
                 List<SAMReaderID> ids = getToolkit().getDataSource().getReaderIDs();
                 for ( SAMReaderID id: ids ) {
                     File file = getToolkit().getDataSource().getSAMFile(id);
-                    SAMFileHeader header = getToolkit().getSAMFileHeader(id);
+                    SAMFileHeader header = getToolkit().getSAMFileHeader();
                     String newFileName = file.getName().substring(0, file.getName().length()-3) + outputSuffix + ".bam";
                     File newFile = new File(baseWriterFilename, newFileName);
                     SAMFileWriter writer = makeWriter(factory, header, newFile);
diff --git a/java/test/org/broadinstitute/sting/gatk/walkers/indels/IndelRealignerIntegrationTest.java b/java/test/org/broadinstitute/sting/gatk/walkers/indels/IndelRealignerIntegrationTest.java
index 5f3b795f7..56107c997 100755
--- a/java/test/org/broadinstitute/sting/gatk/walkers/indels/IndelRealignerIntegrationTest.java
+++ b/java/test/org/broadinstitute/sting/gatk/walkers/indels/IndelRealignerIntegrationTest.java
@@ -32,10 +32,10 @@ public class IndelRealignerIntegrationTest extends WalkerTest {
                  Arrays.asList("bd42a4fa66d7ec7a480c2b94313a78d3"));
         File file1 = new File("/tmp/" + filename1 + ".cleaned.bam");
         file1.deleteOnExit();
-        spec3.addAuxFile("7e1c5a74e572c3e0fbc14f98021e04b4", file1);
+        spec3.addAuxFile("1ceae553c8aa20681ed0736d4d2b4541", file1);
         File file2 = new File("/tmp/" + filename2 + ".cleaned.bam");
         file2.deleteOnExit();
-        spec3.addAuxFile("7a796195c3f13a3c84cd7209f3030d85", file2);
+        spec3.addAuxFile("ce8ddeae5a5aab836ac1dde9448ccb66", file2);
         executeTest("test NWay", spec3);
     }
 }
\ No newline at end of file