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Exception cleanup. All our non-runtime exceptions should extend from StingException, StingException needs to be lower in the tree to build. 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@457 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
hanna 2009-04-16 22:17:25 +00:00
parent e5c80e59dc
commit 01be8f09e3
4 changed files with 20 additions and 5 deletions
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11
java/src/org/broadinstitute/sting/gatk/dataSources/DataSourceGenerationException.java
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@ -1,5 +1,7 @@
package org.broadinstitute.sting.gatk.dataSources; package org.broadinstitute.sting.gatk.dataSources;
import org.broadinstitute.sting.utils.StingException;
/** /**
* User: aaron * User: aaron
* Date: Mar 26, 2009 * Date: Mar 26, 2009
@ -18,7 +20,12 @@ package org.broadinstitute.sting.gatk.dataSources;
* This exception is throw when we're unable to generate a data source, * This exception is throw when we're unable to generate a data source,
* most likely due to an incomplete input source list * most likely due to an incomplete input source list
*/ */
public class DataSourceGenerationException extends Exception { public class DataSourceGenerationException extends StingException {
public DataSourceGenerationException(String message) {
super(message);
}
public DataSourceGenerationException(String message, Throwable throwable) {
super(message, throwable);
}
} }

4
java/src/org/broadinstitute/sting/gatk/dataSources/simpleDataSources/SimpleDataSourceLoadException.java
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@ -1,5 +1,7 @@
package org.broadinstitute.sting.gatk.dataSources.simpleDataSources; package org.broadinstitute.sting.gatk.dataSources.simpleDataSources;
import org.broadinstitute.sting.utils.StingException;
/** /**
* *
* User: aaron * User: aaron
@ -26,7 +28,7 @@ package org.broadinstitute.sting.gatk.dataSources.simpleDataSources;
* <p/> * <p/>
* Generate this on a simple data source load exception * Generate this on a simple data source load exception
*/ */
public class SimpleDataSourceLoadException extends Exception { public class SimpleDataSourceLoadException extends StingException {
public SimpleDataSourceLoadException(String msg) { public SimpleDataSourceLoadException(String msg) {
super(msg); super(msg);
} }

4
java/src/org/broadinstitute/sting/gatk/dataSources/simpleDataSources/SimpleDataSourceSplitException.java
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@ -1,5 +1,7 @@
package org.broadinstitute.sting.gatk.dataSources.simpleDataSources; package org.broadinstitute.sting.gatk.dataSources.simpleDataSources;
import org.broadinstitute.sting.utils.StingException;
/** /**
* *
* User: aaron * User: aaron
@ -26,7 +28,7 @@ package org.broadinstitute.sting.gatk.dataSources.simpleDataSources;
* <p/> * <p/>
* A descriptions should go here. Blame aaron if it's missing. * A descriptions should go here. Blame aaron if it's missing.
*/ */
public class SimpleDataSourceSplitException extends Exception { public class SimpleDataSourceSplitException extends StingException {
public SimpleDataSourceSplitException(String msg) { public SimpleDataSourceSplitException(String msg) {
super(msg); super(msg);
} }

6
java/src/org/broadinstitute/sting/StingException.java → java/src/org/broadinstitute/sting/utils/StingException.java
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@ -1,4 +1,4 @@
package org.broadinstitute.sting; package org.broadinstitute.sting.utils;
/** /**
* *
@ -31,5 +31,9 @@ public class StingException extends Exception {
public StingException(String msg) { public StingException(String msg) {
super(msg); super(msg);
} }
public StingException(String message, Throwable throwable) {
super(message, throwable);
}
} }