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Fix for problem where err stream remapped to output stream in certain cases, (hopefully) completing Matt's hat trick of fail. Thanks, unit tests. 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1634 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
hanna 2009-09-16 08:33:56 +00:00
parent eedf55e94d
commit 01a9b1c63b
2 changed files with 3 additions and 6 deletions
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2
java/src/org/broadinstitute/sting/gatk/io/OutputTracker.java
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@ -75,7 +75,7 @@ public abstract class OutputTracker {
errStub = (errFileName != null) ? new OutputStreamStub(new File(errFileName))
: new OutputStreamStub(System.err);
addOutput(errStub,new OutputStreamStorage(outStub));
addOutput(errStub,new OutputStreamStorage(errStub));
}
}

7
java/test/org/broadinstitute/sting/gatk/io/OutputTrackerTest.java
View File

@ -3,10 +3,7 @@ package org.broadinstitute.sting.gatk.io;
import org.junit.Test;
import org.junit.After;
import org.junit.Assert;
import org.broadinstitute.sting.utils.io.RedirectingOutputStream;
import org.broadinstitute.sting.BaseTest;
import org.broadinstitute.sting.gatk.io.OutputTracker;
import org.broadinstitute.sting.gatk.io.DirectOutputTracker;
import org.broadinstitute.sting.gatk.io.stubs.OutputStreamStub;
import java.io.File;
@ -81,7 +78,7 @@ public class OutputTrackerTest extends BaseTest {
Assert.assertSame("OutputTracker: Error stream incorrectly initialized.", System.err, errStream.getOutputStream());
}
//@Test
@Test
public void testErrorStreamAlone() throws FileNotFoundException {
OutputTracker ot = new DirectOutputTracker();
ot.initializeCoreIO(null,ERROR_FILENAME);
@ -102,7 +99,7 @@ public class OutputTrackerTest extends BaseTest {
Assert.assertEquals("OutputTracker: Written error text is incorrect", errText, ERROR_TEXT);
}
//@Test
@Test
public void testIndependentStreams() throws FileNotFoundException {
OutputTracker ot = new DirectOutputTracker();
ot.initializeCoreIO(OUTPUT_FILENAME,ERROR_FILENAME);