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Update annoying md5s in unit tests, also failing because of header fixing

This commit is contained in:
Mark DePristo 2012-06-26 17:30:48 -04:00
parent cd32b6ae54
commit 016b25be87
1 changed files with 4 additions and 4 deletions
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8
public/java/test/org/broadinstitute/sting/utils/codecs/vcf/VCFHeaderUnitTest.java
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@ -33,13 +33,13 @@ public class VCFHeaderUnitTest extends BaseTest {
@Test @Test
public void testVCF4ToVCF4() { public void testVCF4ToVCF4() {
VCFHeader header = createHeader(VCF4headerStrings); VCFHeader header = createHeader(VCF4headerStrings);
checkMD5ofHeaderFile(header, "47d32e7901650ba69ed41322af638806"); checkMD5ofHeaderFile(header, "f05a57053a0c6a5bac15dba566f7f7ff");
} }
@Test @Test
public void testVCF4ToVCF4_alternate() { public void testVCF4ToVCF4_alternate() {
VCFHeader header = createHeader(VCF4headerStrings_with_negativeOne); VCFHeader header = createHeader(VCF4headerStrings_with_negativeOne);
checkMD5ofHeaderFile(header, "954e9dd756d5f952cfb401a4db6bd145"); checkMD5ofHeaderFile(header, "b1d71cc94261053131f8d239d65a8c9f");
} }
/** /**
@ -112,7 +112,7 @@ public class VCFHeaderUnitTest extends BaseTest {
"##reference=NCBI36\n"+ "##reference=NCBI36\n"+
"##INFO=<ID=GC, Number=0, Type=Flag, Description=\"Overlap with Gencode CCDS coding sequence\">\n"+ "##INFO=<ID=GC, Number=0, Type=Flag, Description=\"Overlap with Gencode CCDS coding sequence\">\n"+
"##INFO=<ID=DP, Number=1, Type=Integer, Description=\"Total number of reads in haplotype window\">\n"+ "##INFO=<ID=DP, Number=1, Type=Integer, Description=\"Total number of reads in haplotype window\">\n"+
"##INFO=<ID=AF, Number=1, Type=Float, Description=\"Dindel estimated population allele frequency\">\n"+ "##INFO=<ID=AF, Number=A, Type=Float, Description=\"Dindel estimated population allele frequency\">\n"+
"##INFO=<ID=CA, Number=1, Type=String, Description=\"Pilot 1 callability mask\">\n"+ "##INFO=<ID=CA, Number=1, Type=String, Description=\"Pilot 1 callability mask\">\n"+
"##INFO=<ID=HP, Number=1, Type=Integer, Description=\"Reference homopolymer tract length\">\n"+ "##INFO=<ID=HP, Number=1, Type=Integer, Description=\"Reference homopolymer tract length\">\n"+
"##INFO=<ID=NS, Number=1, Type=Integer, Description=\"Number of samples with data\">\n"+ "##INFO=<ID=NS, Number=1, Type=Integer, Description=\"Number of samples with data\">\n"+
@ -132,7 +132,7 @@ public class VCFHeaderUnitTest extends BaseTest {
"##reference=NCBI36\n"+ "##reference=NCBI36\n"+
"##INFO=<ID=GC, Number=0, Type=Flag, Description=\"Overlap with Gencode CCDS coding sequence\">\n"+ "##INFO=<ID=GC, Number=0, Type=Flag, Description=\"Overlap with Gencode CCDS coding sequence\">\n"+
"##INFO=<ID=YY, Number=., Type=Integer, Description=\"Some weird value that has lots of parameters\">\n"+ "##INFO=<ID=YY, Number=., Type=Integer, Description=\"Some weird value that has lots of parameters\">\n"+
"##INFO=<ID=AF, Number=1, Type=Float, Description=\"Dindel estimated population allele frequency\">\n"+ "##INFO=<ID=AF, Number=A, Type=Float, Description=\"Dindel estimated population allele frequency\">\n"+
"##INFO=<ID=CA, Number=1, Type=String, Description=\"Pilot 1 callability mask\">\n"+ "##INFO=<ID=CA, Number=1, Type=String, Description=\"Pilot 1 callability mask\">\n"+
"##INFO=<ID=HP, Number=1, Type=Integer, Description=\"Reference homopolymer tract length\">\n"+ "##INFO=<ID=HP, Number=1, Type=Integer, Description=\"Reference homopolymer tract length\">\n"+
"##INFO=<ID=NS, Number=1, Type=Integer, Description=\"Number of samples with data\">\n"+ "##INFO=<ID=NS, Number=1, Type=Integer, Description=\"Number of samples with data\">\n"+