From 0142047da989e931787526ef6835e9e002b901ea Mon Sep 17 00:00:00 2001 From: chartl Date: Thu, 30 Sep 2010 02:08:47 +0000 Subject: [PATCH] And a bugfix 3 seconds later. Don't tell java to use up to 20g while telling the farm to kill the job if it tries to exceed 4g. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4388 348d0f76-0448-11de-a6fe-93d51630548a --- scala/qscript/chartl/RefineGenotypesAndMerge.q | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/scala/qscript/chartl/RefineGenotypesAndMerge.q b/scala/qscript/chartl/RefineGenotypesAndMerge.q index 217f844f0..7d535afc7 100755 --- a/scala/qscript/chartl/RefineGenotypesAndMerge.q +++ b/scala/qscript/chartl/RefineGenotypesAndMerge.q @@ -57,7 +57,7 @@ class BeagleGenotypeRefinement extends QScript { var refine = new BeagleRefinement refine.beagleInput = beagleInput.out refine.beagleOutputBase = beagleBase - refine.beagleMemoryGigs = 20 + refine.beagleMemoryGigs = 4 refine.memoryLimit = Some(4) refine.freezeOutputs