diff --git a/public/java/src/org/broadinstitute/sting/gatk/walkers/variantutils/VariantsToPed.java b/public/java/src/org/broadinstitute/sting/gatk/walkers/variantutils/VariantsToPed.java index 32b2dd06c..aab230b69 100644 --- a/public/java/src/org/broadinstitute/sting/gatk/walkers/variantutils/VariantsToPed.java +++ b/public/java/src/org/broadinstitute/sting/gatk/walkers/variantutils/VariantsToPed.java @@ -114,7 +114,7 @@ public class VariantsToPed extends RodWalker { String mid = mVals.containsKey("mom") ? mVals.get("mom") : String.format("dummy_%d",++dummyID); String sex = mVals.containsKey("sex") ? mVals.get("sex") : "3"; String pheno = mVals.get("phenotype"); - outFam.printf("%s\t%s\t%s\t%s\t%s\t%s%n",fid,pid,sample,mid,sex,pheno); + outFam.printf("%s\t%s\t%s\t%s\t%s\t%s%n",fid,sample,pid,mid,sex,pheno); } } }