From 00b57c751b33deb61700b686a371bb2be6c720b0 Mon Sep 17 00:00:00 2001 From: kshakir Date: Fri, 22 Apr 2011 21:50:07 +0000 Subject: [PATCH] Added missing ".0". git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5682 348d0f76-0448-11de-a6fe-93d51630548a --- scala/qscript/playground/FullCallingPipeline.q | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/scala/qscript/playground/FullCallingPipeline.q b/scala/qscript/playground/FullCallingPipeline.q index 224c8df7a..319fd9766 100755 --- a/scala/qscript/playground/FullCallingPipeline.q +++ b/scala/qscript/playground/FullCallingPipeline.q @@ -202,7 +202,7 @@ class FullCallingPipeline extends QScript { filteredIndels.analysisName = base + "_filteredIndels" filteredIndels.jobOutputFile = new File(".queue/logs/IndelCalling/VariantFiltration.indels.out") filteredIndels.filterName ++= List("IndelQUALFilter","IndelSBFilter","IndelQDFilter") - filteredIndels.filterExpression ++= List("\"QUAL<30.0\"","\"SB>-1.0\"","\"QD<2\"") + filteredIndels.filterExpression ++= List("\"QUAL<30.0\"","\"SB>-1.0\"","\"QD<2.0\"") filteredIndels.variantVCF = indels.out filteredIndels.out = swapExt("IndelCalls", indels.out, ".vcf",".filtered.vcf")