diff --git a/java/src/org/broadinstitute/sting/playground/gatk/walkers/contamination/FindContaminatingReadGroupsWalker.java b/java/src/org/broadinstitute/sting/playground/gatk/walkers/contamination/FindContaminatingReadGroupsWalker.java index c3ec7c315..e5164413f 100755 --- a/java/src/org/broadinstitute/sting/playground/gatk/walkers/contamination/FindContaminatingReadGroupsWalker.java +++ b/java/src/org/broadinstitute/sting/playground/gatk/walkers/contamination/FindContaminatingReadGroupsWalker.java @@ -34,9 +34,6 @@ import cern.jet.stat.Probability; * @author Kiran Garimella */ public class FindContaminatingReadGroupsWalker extends LocusWalker { - @Argument(fullName="verbose", shortName="V", doc="Prints information for all loci, not just the suspected contaminating read groups", required=false) - private Boolean VERBOSE = false; - @Argument(fullName="balance", shortName="bal", doc="The expected alternate allele balance for homozygous-variant sites", required=false) private Double BALANCE = 0.95; @@ -157,7 +154,8 @@ public class FindContaminatingReadGroupsWalker extends LocusWalker