From 00858f16a6bd72e58c42ca2e63fd447dd5faf7ee Mon Sep 17 00:00:00 2001
From: Mark DePristo <depristo@broadinstitute.org>
Date: Mon, 6 Aug 2012 12:57:55 -0400
Subject: [PATCH] Deleting empty unit test for AdaptiveContexts

---
 .../AdaptiveContextUnitTest.java              | 64 -------------------
 1 file changed, 64 deletions(-)
 delete mode 100644 public/java/test/org/broadinstitute/sting/utils/recalibration/AdaptiveContextUnitTest.java

diff --git a/public/java/test/org/broadinstitute/sting/utils/recalibration/AdaptiveContextUnitTest.java b/public/java/test/org/broadinstitute/sting/utils/recalibration/AdaptiveContextUnitTest.java
deleted file mode 100644
index c07c084b8..000000000
--- a/public/java/test/org/broadinstitute/sting/utils/recalibration/AdaptiveContextUnitTest.java
+++ /dev/null
@@ -1,64 +0,0 @@
-package org.broadinstitute.sting.utils.recalibration;
-
-import org.broadinstitute.sting.BaseTest;
-import org.testng.annotations.DataProvider;
-import org.testng.annotations.Test;
-
-/**
- * User: depristo
- * Date: 8/3/12
- * Time: 12:26 PM
- * To change this template use File | Settings | File Templates.
- */
-public class AdaptiveContextUnitTest {
-    // TODO
-    // TODO actually need unit tests when we have validated the value of this approach
-    // TODO particularly before we attempt to optimize the algorithm
-    // TODO
-
-    // --------------------------------------------------------------------------------
-    //
-    // Provider
-    //
-    // --------------------------------------------------------------------------------
-
-    private class AdaptiveContextTestProvider extends BaseTest.TestDataProvider {
-        final RecalDatumNode<ContextDatum> pruned;
-        final RecalDatumNode<ContextDatum> full;
-
-        private AdaptiveContextTestProvider(Class c, RecalDatumNode<ContextDatum> pruned, RecalDatumNode<ContextDatum> full) {
-            super(AdaptiveContextTestProvider.class);
-            this.pruned = pruned;
-            this.full = full;
-        }
-    }
-
-    private RecalDatumNode<ContextDatum> makeTree(final String context, final int N, final int M,
-                                                  final RecalDatumNode<ContextDatum> ... sub) {
-        final ContextDatum contextDatum = new ContextDatum(context, N, M);
-        final RecalDatumNode<ContextDatum> node = new RecalDatumNode<ContextDatum>(contextDatum);
-        for ( final RecalDatumNode<ContextDatum> sub1 : sub ) {
-            node.addSubnode(sub1);
-        }
-        return node;
-    }
-
-    @DataProvider(name = "AdaptiveContextTestProvider")
-    public Object[][] makeRecalDatumTestProvider() {
-//        final RecalDatumNode<ContextDatum> prune1 =
-//                makeTree("A", 10, 1,
-//                        makeTree("AA", 11, 2),
-//                        makeTree("AC", 12, 3),
-//                        makeTree("AG", 13, 4),
-//                        makeTree("AT", 14, 5));
-//
-//        new AdaptiveContextTestProvider(pruned, full);
-
-        return AdaptiveContextTestProvider.getTests(AdaptiveContextTestProvider.class);
-    }
-
-    @Test(dataProvider = "AdaptiveContextTestProvider")
-    public void testAdaptiveContextFill(AdaptiveContextTestProvider cfg) {
-
-    }
-}