From 0070b8ea6a33aabc434f2b22a6e18b47dd49df20 Mon Sep 17 00:00:00 2001
From: ebanks <ebanks@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Fri, 10 Jul 2009 18:31:53 +0000
Subject: [PATCH] Until 454 goes far, far away, at least we can completely
 ignore it

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1219 348d0f76-0448-11de-a6fe-93d51630548a
---
 .../sting/gatk/filters/Platform454Filter.java | 43 +++++++++++++++++++
 1 file changed, 43 insertions(+)
 create mode 100755 java/src/org/broadinstitute/sting/gatk/filters/Platform454Filter.java

diff --git a/java/src/org/broadinstitute/sting/gatk/filters/Platform454Filter.java b/java/src/org/broadinstitute/sting/gatk/filters/Platform454Filter.java
new file mode 100755
index 000000000..ac39fe56a
--- /dev/null
+++ b/java/src/org/broadinstitute/sting/gatk/filters/Platform454Filter.java
@@ -0,0 +1,43 @@
+/*
+ * Copyright (c) 2009 The Broad Institute
+ * Permission is hereby granted, free of charge, to any person
+ * obtaining a copy of this software and associated documentation
+ * files (the "Software"), to deal in the Software without
+ * restriction, including without limitation the rights to use,
+ * copy, modify, merge, publish, distribute, sublicense, and/or sell
+ * copies of the Software, and to permit persons to whom the
+ * Software is furnished to do so, subject to the following
+ * conditions:
+ *
+ * The above copyright notice and this permission notice shall be
+ * included in all copies or substantial portions of the Software.
+ *
+ * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
+ * EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES
+ * OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
+ * NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT
+ * HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY,
+ * WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
+ * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR
+ * OTHER DEALINGS IN THE SOFTWARE.
+ */
+
+package org.broadinstitute.sting.gatk.filters;
+
+import net.sf.picard.filter.SamRecordFilter;
+import net.sf.samtools.SAMRecord;
+
+import org.broadinstitute.sting.utils.Utils;
+
+/**
+ * Filter out 454 reads.
+ *
+ * @author ebanks
+ * @version 0.1
+ */
+
+public class Platform454Filter implements SamRecordFilter {
+    public boolean filterOut(SAMRecord rec) {
+        return (Utils.is454Read(rec, rec.getHeader()));
+    }
+}
\ No newline at end of file