From 005bd71be32f7f233a196b510c536df63e243a75 Mon Sep 17 00:00:00 2001 From: Eric Banks Date: Fri, 12 Aug 2011 10:29:36 -0400 Subject: [PATCH] Working too quickly earlier. Fixing syntax. --- .../walkers/variantutils/VCFStreamingIntegrationTest.java | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/public/java/test/org/broadinstitute/sting/gatk/walkers/variantutils/VCFStreamingIntegrationTest.java b/public/java/test/org/broadinstitute/sting/gatk/walkers/variantutils/VCFStreamingIntegrationTest.java index 132a11273..3801e132d 100644 --- a/public/java/test/org/broadinstitute/sting/gatk/walkers/variantutils/VCFStreamingIntegrationTest.java +++ b/public/java/test/org/broadinstitute/sting/gatk/walkers/variantutils/VCFStreamingIntegrationTest.java @@ -93,8 +93,8 @@ public class VCFStreamingIntegrationTest extends WalkerTest { selectTestSpec = new WalkerTestSpec( "-T VariantEval" + " -R " + b36KGReference + - " --eval,vcf3 " + testFile + - " --comp,vcf,storage=STREAM " + tmpFifo.getAbsolutePath() + + " --eval:vcf3 " + testFile + + " --comp:vcf,storage=STREAM " + tmpFifo.getAbsolutePath() + " -EV CompOverlap -noEV -noST" + " -o %s", 1,