gatk-3.8/settings/repository/org.broad/tribble-119.xml

<ivy-module version="1.0">
    <info organisation="org.broad" module="tribble" revision="119" status="integration" />
</ivy-module>
Rev tribble to 110. Log is: Optimization for PositionalBufferedStream with specialized read(byte, int, int) method -- For binary codecs having an efficient reader of lots of bytes that doesn't fall back into read() itself vastly improves performance. The old version was 10x slower than InputStream, while the new version is +30%. -- Generalize PositionalBufferedStream main() method for performance testing, now accepts cmdline arguments for the file to read, how many iterations, etc Generalize AsciiLineReader main() method for performance testing -- Now accepts cmdline arguments for the file to read, how many iterations, etc AsciiLineReaderTest and PositionBufferedStreamTest were in src not test/src 2012-06-23 01:03:53 +08:00			`<ivy-module version="1.0">`
Critical bugfix for GSA-652 / Multi-threaded VCF -> BCF writing produces invalid intermediate file that fails on merging -- New tribble library now uses 64 bit sizes. The 26K VCF has so much data that low-level tribble block indices where overflowing their int size values. This includes a to-be-committed tribble jar that fixes this problem -- See https://jira.broadinstitute.org/browse/GSA-652 -- Minor cleanup of error messages that were useful on the way to solving this monster problem 2012-11-02 21:09:32 +08:00			`<info organisation="org.broad" module="tribble" revision="119" status="integration" />`
Rev tribble to 110. Log is: Optimization for PositionalBufferedStream with specialized read(byte, int, int) method -- For binary codecs having an efficient reader of lots of bytes that doesn't fall back into read() itself vastly improves performance. The old version was 10x slower than InputStream, while the new version is +30%. -- Generalize PositionalBufferedStream main() method for performance testing, now accepts cmdline arguments for the file to read, how many iterations, etc Generalize AsciiLineReader main() method for performance testing -- Now accepts cmdline arguments for the file to read, how many iterations, etc AsciiLineReaderTest and PositionBufferedStreamTest were in src not test/src 2012-06-23 01:03:53 +08:00			`</ivy-module>`